| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 339,165 | 0 | A | G | 54.5% | 6.0 / 11.3 | 11 | I191V (ATT→GTT) | yahK | NADPH‑dependent aldehyde reductase YahK |
| Reads supporting (aligned to +/- strand): ref base A (2/3); new base G (6/0); total (8/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.06e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTTACCACTTCTGAGGCAAAACGCGAAGCGGCAAAAGCCCTGGG > NZ_CP009273/339077‑339247 | caccacGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGACATATGGGGAt < 2:365895/90‑1 (MQ=255) accacGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGACATATGGGGAtt < 2:232215/90‑1 (MQ=255) tATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGGAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGGCATATGGGGGTTAAGCTg > 1:12609/1‑90 (MQ=255) cACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGGCATATGGGGGTTAAGCTGGCCCACGCGATgggg > 1:276158/1‑90 (MQ=255) aCTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGGCATATGGGGGTTAAGCTGGCCCCCGCGGTggggg > 1:382512/1‑90 (MQ=255) ggccgggccgGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACAtgt < 2:404240/90‑1 (MQ=255) gccgggccggGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGGCATATGGGGGTTAAGGTGGCCCCCGCGATGGGGGGACAtggg > 1:188283/1‑88 (MQ=255) gTGGGCGTGGTCGGCATCGGCGGTCTCGGGCATATGGGGGGTAAGGCGGCCCACGCGATGGGGGGGCAAGTGGTGGCATTTTCCACTTCt > 2:196469/1‑90 (MQ=255) tGGGCGTGGTCGGCATCGGCGGTCTGGGGCATATGGGGGTTAAGGTGGGCCCCGCGGTGGGGGGACATGTGGGGGCATTTACCCCTTCtt > 2:291297/1‑89 (MQ=255) atatGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTTACCACTTCTGAGGCAAAACGCGAAGCGGCAAAAGCCCTgg > 2:117761/1‑90 (MQ=255) tatGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTTACCACTTCTGAGGCAAAACGCGAAGCGGCAAAAGCCCTggg > 1:278620/1‑90 (MQ=255) | CACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTTACCACTTCTGAGGCAAAACGCGAAGCGGCAAAAGCCCTGGG > NZ_CP009273/339077‑339247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |