| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,267,015 | 0 | A | G | 53.8% | 8.3 / 13.5 | 13 | T99T (ACT→ACC) | soxS | superoxide response transcriptional regulator SoxS |
| Reads supporting (aligned to +/- strand): ref base A (2/4); new base G (7/0); total (9/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.10e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.13e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGTGTTTATGCAATGGATGGAGCAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGAGTGCGATCAAACTGCCGACGGAAAACGCGGGAGAAGGTCTGCTGCGAGACATAACCCAGGTCCATTGCGATATCAAAAATCGG > NZ_CP009273/4266927‑4267098 | aGGTGTTTATGCAATGGATGGAGCAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGAg > 2:404854/1‑90 (MQ=255) ggTGTTTATGCAATGGATGGAGCAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGAGt < 2:244862/90‑1 (MQ=255) aaTGGATGGAGCAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGGGGGGGATCaaaat > 2:8342/1‑88 (MQ=255) atggatggAGCAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGGGGGCGATCAAACTg > 2:60388/1‑90 (MQ=255) gaGCAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGGGGGCGATCAAAATGCCGACgg > 2:180364/1‑90 (MQ=255) cAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGAGTGCGATCAAACTGCCGACGGaaa < 2:95168/90‑1 (MQ=255) aTTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGGGGGCGATCAAACTGCCGACGGAAAAc > 1:26484/1‑90 (MQ=255) aTTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGGGGGCGATCAAACTGCCGACGGAAAAc > 2:327514/1‑90 (MQ=255) tACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGGGGGCGATCAAACTGCCGACGGAAAAcgc > 1:406976/1‑90 (MQ=255) gcgcgGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGAGTGCGATCAAACTGCCGACGGAAAACGCGGGAGAAGGTCTGCTGCga < 1:404854/90‑1 (MQ=255) ggTGGCGATAATCGCTGGGGGGGCGATCAAACTGGCGACGGAAAAAGCGGGAGAAGGTCTGCTGGGAGACATAACCCAGGGCCATTGCGa > 2:318200/1‑90 (MQ=255) ggTGGCGATAATCGCTGGGAGTGCGATCAAACTGCCGACGGAAAACGCGGGAGAAGGTCTGCTGCGAGACATAACCCAGGTCCATTGCGa < 2:26484/90‑1 (MQ=255) gCTGGGAGTGCGATCAAACTGCCGACGGAAAACGCGGGAGAAGGTCTGCTGCGAGACATAACCCAGGTCCATTGCGATATCAAAAATCgg > 1:271815/1‑90 (MQ=255) | AGGTGTTTATGCAATGGATGGAGCAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAAAATTACAGGCGGTGGCGATAATCGCTGGGAGTGCGATCAAACTGCCGACGGAAAACGCGGGAGAAGGTCTGCTGCGAGACATAACCCAGGTCCATTGCGATATCAAAAATCGG > NZ_CP009273/4266927‑4267098 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |