Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP009273	314,035	A→G	intergenic (‑5/+7)	rclC ← / ← rclB	reactive chlorine species resistance protein RclC/reactive chlorine resistance periplasmic protein RclB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	314,035	0	A	G	100.0%	59.3 / NA	19	intergenic (‑5/+7)	rclC/rclB	reactive chlorine species resistance protein RclC/reactive chlorine resistance periplasmic protein RclB
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (7/12);  total (7/12)

ATAAAAACAATTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGAACATCCTTATTTATACAATACTGCTGTTGCGGTTGAATTATTATCAATTCGCATCGATGTG  >  NZ_CP009273/313948‑314096                                                                                        |                                                              aTAAAAACAATTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGAc                                                             <  2:94120/90‑1 (MQ=255)     aaaCAATTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATcc                                                         >  2:92038/1‑90 (MQ=255)     aaaCAATTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATcc                                                         <  2:351782/90‑1 (MQ=255)     aaaCAATTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATcc                                                         <  2:32225/90‑1 (MQ=255)     aaaCAATTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATcc                                                         >  2:282453/1‑90 (MQ=255)     aaaCAATTCCAATCCTCAGCCGAATCAATGTCAGGCCAATTTTATCTCCCCGAATTAACAGGTGCAGGTATTTTTCCATCGTGGACATcc                                                         <  2:243981/90‑1 (MQ=255)        cAATTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTCTCCATTGTGGACATCCtta                                                      <  2:300758/90‑1 (MQ=255)          aTTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGCCATCCttatt                                                    <  2:361426/90‑1 (MQ=255)          aTTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATCCttatt                                                    <  2:287208/90‑1 (MQ=255)             gCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATCCttatttat                                                 <  1:375697/90‑1 (MQ=255)                     cAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATCCTTATTTATACAATAct                                         >  1:366721/1‑90 (MQ=255)                      aGACGAATCAGTGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATCCTTATTTATACAATActg                                        >  2:251095/1‑90 (MQ=255)                       gACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATCCTTATTTATACAATActgc                                       >  1:80325/1‑90 (MQ=255)                             tCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATCCTTATTTATACAATACTGCTGTTGc                                 <  1:371405/90‑1 (MQ=255)                                     aGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATCCTTATTTATACAATACTGCTGTTGCGGTTGAat                         <  2:217752/90‑1 (MQ=255)                                            ttttATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATCCTTATTTATACAATACTGCTGTTGCGGTTGAATTATTATc                  <  1:395906/90‑1 (MQ=255)                                                    ccccGACTTAACAGGTGCAGGTATTTTTCCATTGTGGACATCCTTATTTATACAATACTGCTGTTGCGGTTGAATTATTATCAATTCGCa          <  2:222673/90‑1 (MQ=255)                                                            tAACAGGTGCAGGTATTTTTCCATTGTGGACATCCTTATTTATACAATACTGCTGTTGCGGTTGAATTATTATCAATTCGCATCGAtgtg  >  2:340702/1‑90 (MQ=255)                                                            tAACAGGTGCAGGTATTTTTCCATTGTGGACATCCTTATTTATACAATACTGCTGTTGCGGTTGAATTATTATCAATTCGCATCGAtgtg  >  1:255161/1‑90 (MQ=255)                                                                                        |                                                              ATAAAAACAATTGCAATACTCAGACGAATCAATGTCAGGCCAATTTTATCTCCCCGACTTAACAGGTGCAGGTATTTTTCCATTGTGAACATCCTTATTTATACAATACTGCTGTTGCGGTTGAATTATTATCAATTCGCATCGATGTG  >  NZ_CP009273/313948‑314096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑