| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,536,347 | A→G | intergenic (+24/‑179) | feoC → / → rpnA | [Fe‑S]‑dependent transcriptional repressor FeoC/recombination‑promoting nuclease RpnA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,536,347 | 0 | A | G | 100.0% | 36.5 / NA | 12 | intergenic (+24/‑179) | feoC/rpnA | [Fe‑S]‑dependent transcriptional repressor FeoC/recombination‑promoting nuclease RpnA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (7/5); total (7/5) | |||||||||||
TGGCAGTTGTAAAAGCTGCCCGGAAGGAAAAGCCTGTCTGCGCGAGTGGTGGGCGCTGCGTTAACCTTACTCCATCGCCTGTTTTGGAAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATAAAAATGCAACTCTTGCAGCACGGCGTAA > NZ_CP009273/3536260‑3536425 | tGGCAGTTGTAAAAGCTGCCCGGAAGGAAAAGCCTGTCTGCGCGAGTGGTGGGCGCTGCGTTAACCTTACTCCATCGCCTGTTTTGGgaa < 1:56011/90‑1 (MQ=255) gCAGTTGTAAAAGCTGCCCGGAAGGAAAAGCCTGTCTGCGCGAGTGGTGGGCGCTGCGTTAACCTTACTCCATCGCCTGTTTTGGGAAGc < 1:181944/90‑1 (MQ=255) aaaaGCTGCCCGGAAGGAAAAGCCTGTCTGCGCGAGTGGTGGGCGCTGCGTTAACCTTACTCCATCGCCTGTTTTGGGAAGCCCGGTATg < 1:389416/90‑1 (MQ=255) gcgAGTGGTGGGCGCTGCGTTAACCTTACTCCATCGCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCt > 1:155766/1‑90 (MQ=255) gtggtgGGCGCTGCGTTAACCTTACTCCATCGCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTcc > 1:220445/1‑90 (MQ=255) gggCGCTGCGTTAACCTTACTCCATCGCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATaaa < 2:85416/90‑1 (MQ=255) tGCGTTAACCTTACTCCATCGCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATAAAAATGCa < 2:389172/90‑1 (MQ=255) gTTAACCTTACTCCATCGCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATAAAAATGCAAct < 2:339717/90‑1 (MQ=255) tACTCCATCGCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATAAAAATGCAACTCTTgcagc > 1:202962/1‑90 (MQ=255) tACTCCATCGCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATAAAAATGCAACTCTTgcagc > 1:79535/1‑90 (MQ=255) tACTCCATCGCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATAAAAATGCAACTCTTgcagc > 2:158611/1‑90 (MQ=255) tACTCCATCGCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATAAAAATGCAACTCTTgcagc > 2:334645/1‑90 (MQ=255) gCCTGTTTTGGGAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATAAAAATGCAACTCTTGCAGCACGGCGTaa > 1:165660/1‑90 (MQ=255) | TGGCAGTTGTAAAAGCTGCCCGGAAGGAAAAGCCTGTCTGCGCGAGTGGTGGGCGCTGCGTTAACCTTACTCCATCGCCTGTTTTGGAAAGCCCGGTATGCGTCTGCATCCGGGCTTTTTTGCGTGCGGCTTTCCATAAAAATGCAACTCTTGCAGCACGGCGTAA > NZ_CP009273/3536260‑3536425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |