| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 769,756 | A→C | E35D (GAA→GAC) | cydX → | cytochrome bd‑I oxidase subunit CydX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 769,756 | 0 | A | C | 100.0% | 43.8 / NA | 14 | E35D (GAA→GAC) | cydX | cytochrome bd‑I oxidase subunit CydX |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (4/10); total (4/10) | |||||||||||
GAACGCTTCTTGCCTGTTCGTTTGGGGTAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGAAGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGCGC > NZ_CP009273/769677‑769840 | gAACGCTTCTTGCCTGTTCGTTTGGGGTAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCtgat < 2:98004/90‑1 (MQ=255) aCGCTTCTTGCCTGTTCGTTTGGGGTAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCtgatga > 1:13670/1‑90 (MQ=255) tAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGc < 1:242552/90‑1 (MQ=255) tAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGc < 1:29334/90‑1 (MQ=255) tAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGc < 2:36589/90‑1 (MQ=255) ccGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAAt > 1:374299/1‑90 (MQ=255) cgcgCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGc > 1:306612/1‑83 (MQ=255) cgcgCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGc < 2:306612/83‑1 (MQ=255) gcTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAgcgc < 1:221793/90‑1 (MQ=255) ccGGTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGAt < 1:312763/90‑1 (MQ=255) ccGGTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGAt < 2:328567/90‑1 (MQ=255) gTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAgcgc < 1:232744/61‑1 (MQ=255) gTCAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAgcgc > 2:232744/1‑61 (MQ=255) cAAGACGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGgcgc < 2:279301/90‑1 (MQ=255) | GAACGCTTCTTGCCTGTTCGTTTGGGGTAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGAAGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGCGC > NZ_CP009273/769677‑769840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |