| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,107,964 | T→C | intergenic (‑156/+19) | galF ← / ← wcaM | UTP‑‑glucose‑1‑phosphate uridylyltransferase GalF/colanic acid biosynthesis protein WcaM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,107,964 | 0 | T | C | 100.0% | 62.6 / NA | 19 | intergenic (‑156/+19) | galF/wcaM | UTP‑‑glucose‑1‑phosphate uridylyltransferase GalF/colanic acid biosynthesis protein WcaM |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (12/7); total (12/7) | |||||||||||
GATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTTCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAATCTTCTCCACATTAACAATATGG > NZ_CP009273/2107886‑2108037 | gATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGt > 1:99265/1‑90 (MQ=255) ttGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTcc > 1:150419/1‑90 (MQ=255) tgATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTc > 1:77759/1‑90 (MQ=255) tgATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTc > 1:251069/1‑90 (MQ=255) aCGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCg > 1:64748/1‑90 (MQ=255) gcTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCaa < 1:373471/66‑1 (MQ=255) gcTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCaa > 2:373471/1‑66 (MQ=255) ttCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCt > 1:398449/1‑90 (MQ=255) tCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTa < 2:343496/90‑1 (MQ=255) ttGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGc < 1:170138/58‑1 (MQ=255) ttGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGc > 2:170138/1‑58 (MQ=255) gCAGTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAAtcttc > 1:9850/1‑90 (MQ=255) gTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAATCTTCTcc > 1:278500/1‑90 (MQ=255) gTAGCATTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAATCTTCTcc < 2:38771/90‑1 (MQ=255) aTTGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAATCTTCTCCACAtt < 2:77759/90‑1 (MQ=255) ttGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAATCTTCTCCACATTa < 2:99265/90‑1 (MQ=255) tGTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAATCTTCTCCACATTaa > 1:110715/1‑90 (MQ=255) gTTCCTAAGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAATCTTCTCCACATTAAc > 1:2405/1‑90 (MQ=255) aGTATGACTCCATTTTCCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAATCTTCTCCACATTAACAATATgg < 2:64748/90‑1 (MQ=255) | GATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACTCCATTTTTCCAGGAATGGTCGCAAATCTACTCCCTCAGTTCCGGCAATCTAAAGTTAATCTTCTCCACATTAACAATATGG > NZ_CP009273/2107886‑2108037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |