| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1242342 = | 24 (0.680) | 3 (0.090) | 3/160 | 2.6 | 10.8% | coding (491/1698 nt) | treA | alpha,alpha‑trehalase |
| ? | NZ_CP009273 | 1242352 = | 26 (0.760) | coding (481/1698 nt) | treA | alpha,alpha‑trehalase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGCGGTAACAGAGAATCCCATTTTTCGGTGTTTT > NZ_CP009273/1242266‑1242441 | tgggattctctgttaccgctgccggaaccttatgtcgtgccgggcggacgctttcgcgaggtatattactgggacagttacttcacTGTc > 2:238344‑M2/87‑90 (MQ=255) cTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc < 1:113717/90‑1 (MQ=255) cTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc < 2:679280/90‑1 (MQ=255) cTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc < 2:23994/90‑1 (MQ=255) cTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc < 1:774408/90‑1 (MQ=255) cTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc < 1:566163/90‑1 (MQ=255) cTATTTCATGACCAAAATTGGCCACGATAACCGCGACTTTATCCCAGTTACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc < 2:941616/90‑1 (MQ=255) aTGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAata > 1:626248/1‑90 (MQ=255) tGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAatat < 2:626248/90‑1 (MQ=255) atatCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCg > 1:325368/1‑90 (MQ=255) ttatgtcgtgccgggcggacgctttcgcgaggtatattactgggacagttacttcacTGTCCCAGTAATATACCTCGCGAAAGCGTCCGc < 1:238344‑M2/33‑1 (MQ=255) gcgACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGc < 2:325368/90‑1 (MQ=255) gttccgggcggactctttcgcgaggtatattactgggacaGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCAc < 2:549575‑M1/50‑1 (MQ=255) gtgccgggcggacgctttcgcgaggtatattactgggacagttacttcacTGTCCCAGTAATATACCTCGCGAAAGAGTCCGCCCGGAAc < 2:549575‑M2/40‑1 (MQ=255) gACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCAc < 1:1067868/90‑1 (MQ=255) ttATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc > 1:82705/1‑52 (MQ=255) ttATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc < 2:82705/52‑1 (MQ=255) ttATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACa > 1:883651/1‑90 (MQ=255) gcggacgctttcgcgaggtatattactgggacaGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATaa < 1:238344‑M1/57‑1 (MQ=255) aGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGtt > 1:23606/1‑90 (MQ=255) gACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc > 1:394909/1‑42 (MQ=255) gACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTccc < 2:394909/42‑1 (MQ=255) gACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAatat > 1:933957/1‑50 (MQ=255) gACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAatat < 2:933957/50‑1 (MQ=255) ccGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGc > 2:1018317/1‑90 (MQ=255) cTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGc < 2:776045/90‑1 (MQ=255) gacaGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGCGGTAACAGAGAATCCCa > 2:238344‑M1/5‑90 (MQ=255) ggTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGCGGTAACAGAGAATCCCAttt > 1:229877/1‑90 (MQ=255) ggTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGCGGTAACAGAGAATCCCAttt > 2:194388/1‑90 (MQ=255) ggTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGCGGTAACAGAGAATCCCAttt > 1:632436/1‑90 (MQ=255) GTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGCGGTAACAGAGAATCCCAtttt < 1:584941‑M1/90‑1 (MQ=255) aaCTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGc < 2:357101/62‑1 (MQ=255) aaCTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGc > 1:357101/1‑62 (MQ=255) tGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGCGGTAACAGAGAATCCCATTTTTCGGTGtttt > 1:147103/1‑90 (MQ=255) | GTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATACCTCGCGAAAGCGTCCGCCCGGCACGACATAAGGTTCCGGCAGCGGTAACAGAGAATCCCATTTTTCGGTGTTTT > NZ_CP009273/1242266‑1242441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |