| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 47.8% | 11.4 / 15.3 | 23 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (1/11); new base T (11/0); total (12/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.61e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATT > NZ_CP009273/3199712‑3199872 | tCACGAACTGTTAATTACATATTCCCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACaa < 2:419055/90‑1 (MQ=255) cTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑GATTTTTTTAGAaaaaaaaaaa > 2:491609/1‑90 (MQ=255) cTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGG‑AATTTTTTTAGACAAATAaaaa > 1:113021/1‑90 (MQ=255) cATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCCAAAAAAAAAAAAAAACTgtggt > 1:959524/1‑86 (MQ=255) cATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGG‑AATTTTTTCCGAAAAAAAAAAAAAATTGAggt > 1:822567/1‑88 (MQ=255) tatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGG‑GATTTTTTCAGAAAAAAAAAAAAAAAGGAGGTGc > 1:305179/1‑90 (MQ=255) gTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGG‑GATTTTTTCAGACAAAAAAAAAAAATGGAGTTGCCatgattg > 1:125883/1‑88 (MQ=255) tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGG‑AATTTTTTCAGACAAAAAAAAAAAAAGGAGGTTGCATGGTGAg > 1:884555/1‑90 (MQ=255) ggCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGc < 2:950233/90‑1 (MQ=255) gCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGG‑GATTTTTTTTAAAAAAAAAAAAAAATGGAGGTGGCCTGATGAggg > 2:740387/1‑88 (MQ=255) aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGaa < 1:280629/90‑1 (MQ=255) aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGaa < 1:135862/90‑1 (MQ=255) atatAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaa < 2:1060838/90‑1 (MQ=255) ataAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaata < 2:526519/90‑1 (MQ=255) taAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaataa < 1:37505/90‑1 (MQ=255) ccACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAAc < 1:491609/90‑1 (MQ=255) acaTTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTTCAAAAAAAAAAAAAAAAAGGAGGTGGAAAGAGGAGGGGAAATAATAAGAAAAAg > 2:320064/1‑90 (MQ=255) aTTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGc < 1:415227/90‑1 (MQ=255) ggTAGTTTGTGGCGGTG‑GATTTTTTCAGAAAAAAAAAAAAAATGGGGGTGGCATGGTGAGGGAAAGAAAAAAAAAACAAGCAGTGAATaa > 1:636252/1‑90 (MQ=255) ggTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATaa < 1:367114/90‑1 (MQ=255) gTTTGTGGCGGTG‑AATTTTTTCAGACAAAAACAAAAAACGGAGGTGCCCTGATGAGGGAAAGGAATAAACAAAACGCAGGGAATAAGTTg > 1:240070/1‑90 (MQ=255) tgtgGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACa < 1:465068/90‑1 (MQ=255) ggTG‑AATTTTTTCAGACAAAAACAAAAAATTGGGGTGGCATGATGGGGGAAAAAAAAAAACAAAAGGCAGTGAAAAAGTTGACAGAGAtt > 2:944437/1‑90 (MQ=255) | TCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATT > NZ_CP009273/3199712‑3199872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |