| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 687,319 | 0 | T | A | 53.8% | 2.6 / 16.9 | 13 | intergenic (‑79/+11) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| Reads supporting (aligned to +/- strand): ref base T (0/6); new base A (7/0); total (7/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.83e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGCAAATTATTCTTTCTCGGCAATGTACGGATCCTCATAGCCCAGAGCAAGCATA > NZ_CP009273/687255‑687378 | tctcATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCGGGGGCGTCTGCCCGTCAAAAGCCCGGCAAATTATTTTTTCTCGGc > 2:515826/1‑90 (MQ=255)tctcATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGCAAATTATTCTTTCTCGGc < 1:167378/90‑1 (MQ=255)tctcATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGCAAATTATTCTTTCTCGGc < 2:881111/90‑1 (MQ=255) tcATGTTAGTTAATCAAAACGCCGTCGTTAATCCCCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGCAAATTATTCTTTCTCGGCaa < 2:375374/90‑1 (MQ=255) ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCGGGGGCGGCTGCCCGTCAAAAGCCTGGCAAAATATTTTTTTTCGGCAATGTAc > 1:719531/1‑90 (MQ=255) tagttaATCAAAACGCCGTCGTTAATCACCAACGGCGGGGGCGGCTTCCAGTCAAAATCCTGGCAAATTATTCTTTTTCGGCAATGTACg > 2:167378/1‑90 (MQ=255) taATCAAAACGCCGTCGTTAATCACCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGAAAATTATTCTTTCTCGGCAATGTACGGATc < 1:258044/90‑1 (MQ=255) aaTCAAAACGCCGTCGTTAATCACCAACGGCGGGGGCGTCTGCCAGTCAAAAGCCTGGCAAAATATTTTTTTTCGGCAATGTACGGATcc > 1:275376/1‑90 (MQ=255) gCCGTCGTTAATCACCAACGGCGGGGGCGGCTGCCAGGCAAAATCCCGGCAAAATATTTTTTTTCCGCAAATTACGGGTCCTCATAAccc > 1:764919/1‑90 (MQ=255) ccGTCGTTAATCACCAACGGCGGGGACGGCTGCCAGTCAAAAGCCCGGCAAATTATTTTTTTTCGGCAATGTACGGATCCTCATAAcccc > 1:397860/1‑89 (MQ=255) gtcgtTAATCACCAACGGCGGGGGCGTCTGCCCGTCAAAAACCCGGCAAAATATTTTTTTTTCGGAATGTACGGGTCCTCATAGCCCaga > 2:729902/1‑90 (MQ=255) cgtTAATCACCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGCAAATTATTCTTTCTCGGCAATGTACGGATCCTCATAGCCCAGagc < 2:271630/90‑1 (MQ=255) cACCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGCAAATTATTCTTTCTCGGCAATGTACGGATCCTCATAGCCCAGAGCAAGCATa < 2:275376/90‑1 (MQ=255) | TCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGCAAATTATTCTTTCTCGGCAATGTACGGATCCTCATAGCCCAGAGCAAGCATA > NZ_CP009273/687255‑687378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |