| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 444,604 | T→C | A498A (GCA→GCG) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 444,604 | 0 | T | C | 100.0% | 108.4 / NA | 31 | A498A (GCA→GCG) | cyoB | cytochrome o ubiquinol oxidase subunit I |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/18); total (13/18) | |||||||||||
ACGGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCTGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAG > NZ_CP009273/444517‑444687 | aCGGTTCTGGTCTCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGc < 1:451410/90‑1 (MQ=255)aCGGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGc < 2:701930/90‑1 (MQ=255) ggTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCaa < 1:792686/90‑1 (MQ=255) ggTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCaa < 1:558045/90‑1 (MQ=255) cTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAatcat > 1:1048882/1‑90 (MQ=255) gcggtcgcgAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt < 2:942722/90‑1 (MQ=255) gcggtcgcgAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt < 2:56463/90‑1 (MQ=255) gcggtcgcgAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt < 2:422913/90‑1 (MQ=255) gcggtcgcgAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt < 2:1048882/90‑1 (MQ=255) gcggtcgcgAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt < 1:546954/90‑1 (MQ=255) gcggtcgcgAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt < 1:357041/90‑1 (MQ=255) cggtcgcgAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATg > 1:114846/1‑90 (MQ=255) cggtcgcgAATAGAAACGTACATCTCAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATg > 1:132777/1‑90 (MQ=255) gtcgagAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGgt > 1:478529/1‑90 (MQ=255) tACATCTCAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCa < 2:132777/90‑1 (MQ=255) cTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATctg > 1:167372/1‑90 (MQ=255) gAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATctgct > 2:383345/1‑90 (MQ=255) aaTAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCTCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATctgctg > 2:45447/1‑90 (MQ=255) aTAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGGGGTGGACCTGCGGGTCAATCTGCTgg > 1:11709/1‑90 (MQ=255) tAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGc > 1:368312/1‑90 (MQ=255) agagAATACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAacgac < 2:499282/90‑1 (MQ=255) aTACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTc < 2:170347/90‑1 (MQ=255) aTACCCAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTc < 2:618946/90‑1 (MQ=255) cccAGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTCATg < 2:167372/90‑1 (MQ=255) aGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt > 2:20584/1‑41 (MQ=255) aGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt < 2:185672/41‑1 (MQ=255) aGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt > 1:185672/1‑41 (MQ=255) aGCGCAATCAGTACTGCACCGCTGGCCGCAATCATCAGCAt < 1:20584/41‑1 (MQ=255) gCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCa > 1:423511/1‑90 (MQ=255) gCACCGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCa > 1:1012451/1‑90 (MQ=255) ccGCTGGCCGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAgcgctgtc < 2:66516/90‑5 (MQ=255) gctggccgCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAg > 1:61430/1‑90 (MQ=255) gctggccgCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAg > 1:455989/1‑90 (MQ=255) | ACGGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGCTGCAATCATCAGCATGGTGTGGAACTGCGGGTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAG > NZ_CP009273/444517‑444687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |