| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 710,687 | T→C | intergenic (+33/‑181) | pgm → / → BW25113_RS03560 | phosphoglucomutase (alpha‑D‑glucose‑1,6‑bisphosphate‑dependent)/lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 710,687 | 0 | T | C | 100.0% | 66.2 / NA | 20 | intergenic (+33/‑181) | pgm/BW25113_RS03560 | phosphoglucomutase (alpha‑D‑glucose‑1,6‑bisphosphate‑dependent)/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/13); total (7/13) | |||||||||||
GCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAA > NZ_CP009273/710600‑710761 | gCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCg < 1:324867/90‑1 (MQ=255) gATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGccc < 1:201517/90‑1 (MQ=255) cGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGa > 2:439711/1‑90 (MQ=255) tGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGa > 1:695636/1‑90 (MQ=255) tAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAAtt < 1:232781/90‑1 (MQ=255) aaaaCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTAc < 2:725483/90‑1 (MQ=255) aaaaCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTAc < 2:120759/90‑1 (MQ=255) aaaaCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTAc < 2:147664/90‑1 (MQ=255) aCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGa > 1:287500/1‑79 (MQ=255) aCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGa < 2:287500/79‑1 (MQ=255) aCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCt > 1:417058/1‑90 (MQ=255) gTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATc < 1:297943/90‑1 (MQ=255) aaaCACATTTAATAAAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAg < 1:1066134/90‑1 (MQ=255) taaAAAAAGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGAt < 1:96637/90‑1 (MQ=255) aaaaaaaGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCt > 2:783977/1‑81 (MQ=255) aaaaaaaGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCt < 1:783977/81‑1 (MQ=255) aaaaaaaGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATg > 2:501954/1‑90 (MQ=255) aaaaaGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGt > 1:831149/1‑90 (MQ=255) aGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCaa < 2:775506/90‑1 (MQ=255) aGGGCGGTCGCAAGACCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCaa < 1:439711/90‑1 (MQ=255) | GCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAA > NZ_CP009273/710600‑710761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |