| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 933,331 | T→C | D168D (GAT→GAC) | lolA → | outer membrane lipoprotein chaperone LolA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 933,331 | 0 | T | C | 100.0% | 45.5 / NA | 14 | D168D (GAT→GAC) | lolA | outer membrane lipoprotein chaperone LolA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (6/8); total (6/8) | |||||||||||
AATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTTCACCCCGCCGCAAGGCGTCA > NZ_CP009273/933251‑933416 | aaTGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGACCAGCgcagc < 1:734149/90‑1 (MQ=255)aaTGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGACCAGCgcagc < 2:970129/90‑1 (MQ=255) cGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATgg < 1:260907/90‑1 (MQ=255) cGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATgg < 1:598498/90‑1 (MQ=255) cGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATgg < 1:947348/90‑1 (MQ=255) gggACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGc > 1:607585/1‑90 (MQ=255) gggACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGc > 2:964828/1‑90 (MQ=255) ggACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCt < 2:555087/90‑1 (MQ=255) aTCAGTTTAGCGCGGTGGAGCAGGACGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTa > 1:973825/1‑90 (MQ=255) gcgcGGGGGAGCAGGACGCCCAGCGCAGCATTTATCAACTAAAACCCCAGCAAAAGGGGGCTGTGGATGCAGCGAAATTTACCTTCcccc < 2:973825/90‑1 (MQ=255) gCAGGACGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCt < 1:585650/52‑1 (MQ=255) gCAGGACGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCt > 2:585650/1‑52 (MQ=255) gacgacCAGCGCAGCAGTTATCAACTGAAACCCCAGCAAAATGGGGCTGTGGATTCAGCGAAATTTACCTTCCCCCCGCCGCAAGGCGTc < 1:429531/90‑1 (MQ=255) aCGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTTCACCCCGCCGCAAGGCGTCa > 1:1005002/1‑90 (MQ=255) aCGACCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTTCACCCCGCCGCAAGGCGTCa > 1:1028254/1‑90 (MQ=255) | AATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTTCACCCCGCCGCAAGGCGTCA > NZ_CP009273/933251‑933416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |