| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,077,067 | T→C | pseudogene (256/830 nt) | BW25113_RS05295 → | FTR1 family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,077,067 | 0 | T | C | 100.0% | 71.6 / NA | 22 | pseudogene (256/830 nt) | BW25113_RS05295 | FTR1 family protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/13); total (9/13) | |||||||||||
ACGAAACCACCGGCGAATTTCCGCAAAAAGAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGATGGTTTTCTGGATGCGCAAAGTGTCGCGCAACGTCAAAGTGCAACTGGAACAGGCAGTCGATAGCGCATTGCAG > NZ_CP009273/1076980‑1077140 | aCGAAACCACCGGCGAATTTCCGCAAAAAGAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACgg > 1:855411/1‑90 (MQ=255) ccGGCGAATTTCCGCAAAAATAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGGGATCCTTACCTGGACGGTTTTCTGGa > 1:265752/1‑90 (MQ=255) aTTTCCGCAAAAAGAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCaa < 2:1007677/90‑1 (MQ=255) tCCGCAAAAAGAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCaa < 2:546947/87‑1 (MQ=255) tCCGCAAAAAGAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCaa > 1:546947/1‑87 (MQ=255) aaaGAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCgcgc < 1:1019801/90‑1 (MQ=255) aaaGAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCgcgc < 2:974670/90‑1 (MQ=255) aGAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCGCGCaa < 1:764303/90‑1 (MQ=255) aCTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCGCGC‑ACGTCAAAGTg < 1:228249/90‑1 (MQ=255) tGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCaa > 1:64014/1‑67 (MQ=255) tGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCaa < 2:64014/67‑1 (MQ=255) gTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCGCGCAACGTCAAAGTGCa < 1:737880/90‑1 (MQ=255) aTCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCaa > 1:756548/1‑56 (MQ=255) aTCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCaa > 1:600287/1‑56 (MQ=255) aTCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCaa < 2:600287/56‑1 (MQ=255) aTCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCaa < 2:756548/56‑1 (MQ=255) aTCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGACGGGTTTCTGGATGCGCAAAGTGTCGCGCAACGTCAAAGTGCAACTGGAACAg > 2:775926/1‑90 (MQ=255) aTCGTGGCGGTGATCGCCGTGGGGATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCGCGCAACGTCAAAGTGCAACTGGAACAg > 1:1018321/1‑90 (MQ=255) gCGGTGATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCGCGCAACGTCAAAGTGCAACTGGAACAGGCAGTc < 2:1018321/90‑1 (MQ=255) ggTGATCGCCGTGGGGATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCGCGCAACGTCAAAGTGCAACTGGAACAGGCAGTCGa > 1:731097/1‑90 (MQ=255) gATCGCCGTGGTGATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCGCGCAACGTCAAAGTGCAACTGGAACAGGCAGTCGATAg < 1:660466/90‑1 (MQ=255) gtgATCCTTACCTGGACGGTTTTCTGGATGCGCAAAGTGTCGCGCAACGTCAAAGTGCAACTGGAACAGGCAGTCGATAGCGCATTGCAg < 1:1068289/90‑1 (MQ=255) | ACGAAACCACCGGCGAATTTCCGCAAAAAGAACAGGAACTGTTTGAAGGTATCGTGGCGGTGATCGCCGTGGTGATCCTTACCTGGATGGTTTTCTGGATGCGCAAAGTGTCGCGCAACGTCAAAGTGCAACTGGAACAGGCAGTCGATAGCGCATTGCAG > NZ_CP009273/1076980‑1077140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |