| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,185,332 | T→A | D191V (GAT→GTT) | phoP ← | two‑component system response regulator PhoP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,185,332 | 0 | T | A | 100.0% | 41.6 / NA | 17 | D191V (GAT→GTT) | phoP | two‑component system response regulator PhoP |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (10/7); total (10/7) | |||||||||||
AACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTT‑‑GGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCG > NZ_CP009273/1185245‑1185417 | aaCAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTT‑‑GGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTacaaca < 1:236881/90‑1 (MQ=255)aaCAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTT‑‑GGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTacaaca < 1:795505/90‑1 (MQ=255) aCAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTT‑‑GGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTAcaacaa < 2:700783/90‑1 (MQ=255) tAGCCCTGGCCGCGAACGGTGGTAATCACTTCTT‑‑GGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTa > 1:758086/1‑90 (MQ=255) gCCGCGAACGGTGGTAATCACTTCTTGGGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCtt > 2:487533/1‑90 (MQ=255) gCCGCGAACGGTGGTAATCACTTCTT‑‑GGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTc > 2:1064988/1‑90 (MQ=255) cgAACGGTGGTAATCACTTCTT‑‑GGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGc > 2:90557/1‑90 (MQ=255) cttctt‑‑GGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGAt > 1:443159/1‑90 (MQ=255) atatTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGAt < 1:587370/80‑1 (MQ=255) atatTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGAt > 2:587370/1‑80 (MQ=255) gCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGAt < 1:85986/73‑1 (MQ=255) gCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGAt > 2:85986/1‑73 (MQ=255) tGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGAt < 1:681680/70‑1 (MQ=255) tGAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGAt > 2:681680/1‑70 (MQ=255) gAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTcc > 2:12015/1‑59 (MQ=255) gAATTTTTTTGCGCAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTcc < 1:12015/59‑1 (MQ=255) cgcAGACGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGAcc < 1:413282/90‑1 (MQ=255) aCGTCCCATCAGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACttt < 1:634361/90‑1 (MQ=255) aGTACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTg < 1:487533/90‑1 (MQ=255) tACAACAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCg > 1:1001912/1‑90 (MQ=255) | AACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTT‑‑GGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCG > NZ_CP009273/1185245‑1185417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |