| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 427,262 | A→C | F70V (TTC→GTC) | tsx ← | nucleoside‑specific channel‑forming protein Tsx |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 427,262 | 0 | A | C | 100.0% | 115.7 / NA | 33 | F70V (TTC→GTC) | tsx | nucleoside‑specific channel‑forming protein Tsx |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (19/14); total (19/14) | |||||||||||
AGCGGAGAACCGTGGTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGAACCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACGGGTGTGATAGCTTCCGACA > NZ_CP009273/427177‑427347 | aGCGGAGAACCGTGGTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATGCCGGCGCATCCGCATAACCATAGAAGTCGACCCAg < 1:94338/90‑1 (MQ=255) gCGGAGAACCGTGGTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGt > 1:132393/1‑90 (MQ=255) gCGGAGAACCGTGGTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGt > 2:633308/1‑90 (MQ=255) gCGGAGAACCGTGGTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGt > 1:958544/1‑90 (MQ=255) gCGGAGAACCGTGGTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGt > 1:511182/1‑90 (MQ=255) gTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGaa < 1:130317/90‑1 (MQ=255) gTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGaa < 2:1022644/90‑1 (MQ=255) gTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGaa > 2:750662/1‑90 (MQ=255) aCCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTa > 2:307282/1‑90 (MQ=255) ccTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTAc > 2:608928/1‑90 (MQ=255) tttAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTc > 1:267720/1‑90 (MQ=255) ttAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCa < 2:487980/90‑1 (MQ=255) tAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATTCTTCGTACTCaa < 1:697620/90‑1 (MQ=255) tAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCaa < 2:628270/90‑1 (MQ=255) tACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGt > 1:876716/1‑90 (MQ=255) tACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGt > 1:576944/1‑90 (MQ=255) tACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTAGCGt > 1:633039/1‑90 (MQ=255) aTACCGGCGCATCCGCATAACCATAGAAGTCGAccc < 1:796250/36‑1 (MQ=255) aTACCGGCGCATCCGCATAACCATAGAAGTCGAccc > 2:796250/1‑36 (MQ=255) gcATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGaaa > 2:79523/1‑90 (MQ=255) cATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAAc < 1:750662/90‑1 (MQ=255) cATCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAAc < 2:791350/90‑1 (MQ=255) aTCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAggtaggta < 1:228195/64‑1 (MQ=255) aTCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAggtaggta > 2:228195/1‑64 (MQ=255) aTCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACg < 1:540848/90‑1 (MQ=255) aTCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACg < 1:948030/90‑1 (MQ=255) tCCGCATAACCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACgg < 1:608928/90‑1 (MQ=255) aaCCATAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACGGGTGTGAt < 2:929181/90‑1 (MQ=255) aTAGAAGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACGGGTGTGATAGCt > 2:794663/1‑90 (MQ=255) aGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGc < 2:290911/54‑1 (MQ=255) aGTCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGc > 1:290911/1‑54 (MQ=255) tCGACCCAGTCTTTTTTAGCGATTGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACGGGTGTGATAGCTTCCGACa > 1:643570/1‑90 (MQ=255) tCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACGGGTGTGATAGCTTCCGACa > 2:276634/1‑90 (MQ=255) tCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACGGGTGTGATAGCTTCCGACa > 2:1075081/1‑90 (MQ=255) tCGACCCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACGGGTGTGATAGCTTCCGACa > 2:999534/1‑90 (MQ=255) | AGCGGAGAACCGTGGTTCCAGATACCTTTAGCATCGGAGTTACCGCCGAAGAATACCGGCGCATCCGCATAACCATAGAAGTCGAACCAGTCTTTTTTAGCGAATGCTTCGTACTCAAGGTAGGTATCGTTGCGGATCTGCGGTCCGAAACGGGTGTGATAGCTTCCGACA > NZ_CP009273/427177‑427347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |