Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 4,267,804 Δ1 bp coding (408/465 nt) soxR → redox‑sensitive transcriptional activator SoxR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092734,267,8040C.100.0% 30.4 / NA 9coding (408/465 nt)soxRredox‑sensitive transcriptional activator SoxR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (3/6);  total (3/6)

TAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTT  >  NZ_CP009273/4267722‑4267879
                                                                                  |                                                                           
tAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGG‑GACCGCtt                                                                     <  1:167163/90‑1 (MQ=255)
       gcTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGG‑GACCGCTTAGGagaa                                                              >  2:171418/1‑90 (MQ=255)
                          ggATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGG‑GACCGCTTAGGAGAAGAAGGTACCGGCGCACGCt                                           <  1:274515/90‑1 (MQ=255)
                                     ttGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGG‑GACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGAt                                >  2:87222/1‑90 (MQ=255)
                                                  tCGCGCAGTGATTGCCCGTTGCGTAACCCGGG‑GACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTagc                   <  1:87222/90‑3 (MQ=255)
                                                    gcgcAGTGATTGCCCGTTGCGTAACCCGGG‑GACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAgc                 <  1:120205/90‑1 (MQ=255)
                                                       cAGTGATTGCCCGTTGCGTAACCCGGG‑GACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGcc              <  1:283373/90‑1 (MQ=255)
                                                            aTTGCCCGTTGCGTAACCCGGG‑GACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAg         <  1:280156/90‑1 (MQ=255)
                                                                   gTTGCGTAACTCGGG‑GACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCtt  >  1:130869/1‑90 (MQ=255)
                                                                                  |                                                                           
TAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTT  >  NZ_CP009273/4267722‑4267879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑