Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1133625	1133649	25	3 [1]	[1] 2	flgJ	flagellar assembly peptidoglycan hydrolase FlgJ

GGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCA  >  NZ_CP009273/1133546‑1133635                                                                               |            ggAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCa  <  2:165504/90‑1 (MQ=255)                                           gcgcTACGCCGCCGTGACGACCGCCGCGAGTGCGGaa             <  1:10044/37‑1 (MQ=255)                                           gcgcTACGCCGCCGTGACGACCGCCGCGAGTGCGGaa             >  2:10044/1‑37 (MQ=255)                                                                               |            GGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCA  >  NZ_CP009273/1133546‑1133635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑