Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1961009	1961030	22	2 [1]	[1] 4	cheZ	protein phosphatase CheZ

TGGTATGCGCGGGTACATCTGCCAGAAATTGTCGTGTATCTGTTACCAGTTCACGGGCGTCGGCAAGGTCAATCGGATCGGCAAACCAGTC  >  NZ_CP009273/1960919‑1961009                                                                                          |  tGGTATGCGCGGGTACATCTGACAGAAATTGTCGTGTATCTGTTACCAGTTCACGGGCGTCGGCAAGGTCAATCGGATCGGCAAACCAGt   >  2:225415/1‑90 (MQ=255)  ggTATGCGCGGGTACATCTGCCAGAAATTGTCGTGTATCTGTTACCAGTTCACGGGCGTCGGCAAGGTCAATCGGATCGGCAAACCAGTc  <  2:283661/90‑1 (MQ=255)                                                                                          |  TGGTATGCGCGGGTACATCTGCCAGAAATTGTCGTGTATCTGTTACCAGTTCACGGGCGTCGGCAAGGTCAATCGGATCGGCAAACCAGTC  >  NZ_CP009273/1960919‑1961009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑