Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1705760	1705770	11	2 [0]	[0] 2	rsxE	electron transport complex subunit RsxE

GAATGTCTGATGAATAAAGCAAAACGCCTGGAGATCCTCACTCGCCTGCGTG  >  NZ_CP009273/1705771‑1705822 |                                                    gAATGTCTGATGAATAAAGCAAAACGCCTGGAGATCCTCACTCGCCTGCGTg  <  1:234447/52‑1 (MQ=255) gAATGTCTGATGAATAAAGCAAAACGCCTGGAGATCCTCACTCGCCTGCGTg  >  2:234447/1‑52 (MQ=255) |                                                    GAATGTCTGATGAATAAAGCAAAACGCCTGGAGATCCTCACTCGCCTGCGTG  >  NZ_CP009273/1705771‑1705822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑