Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1459374	1459384	11	2 [1]	[0] 2	paaY/BW25113_RS25580	phenylacetic acid degradation protein PaaY/hypothetical protein

TGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTT  >  NZ_CP009273/1459284‑1459378                                                                                          |      tGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGctc       <  2:279662/90‑1 (MQ=255)      tttGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCtt  <  1:128827/90‑1 (MQ=255)                                                                                          |      TGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTT  >  NZ_CP009273/1459284‑1459378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑