| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 371,031 | 0 | T | G | 58.3% | 8.5 / 11.9 | 13 | G39G (GGT→GGG) | mhpT | 3‑(3‑hydroxy‑phenyl)propionate transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/5); new base G (7/0); total (8/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.26e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCATCCCGCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGTGGCA‑TCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACT‑CGGTTTGCTACCCGG > NZ_CP009273/370942‑371111 | tCATCCCGCCTGATACTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGt < 1:78919/90‑1 (MQ=255) aTCCCGCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCgggggg > 1:89288/1‑90 (MQ=255) gCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGGGGGA‑TCg > 1:117831/1‑90 (MQ=255) gACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGAGTCATTGGCCCAGGAtt > 2:275252/1‑90 (MQ=255) aGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGGGGGA‑TCGCCCCGGCCTTTGCCCTCGGTAAAAAGCAAATGGGCTGGGTAttttg > 2:66554/1‑88 (MQ=255) tCAGGCGGCTGGCATTGCGGCGGGGGGGA‑GCTCCCCGGCTTTTGCACCCGCTAAAAAACAAATGGGGTGGGGATTTTTCGCCGGGATaat > 2:192252/1‑88 (MQ=255) cAGGCGGCTGGCATTGCGGCGGGTGGCA‑TCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACT‑c < 1:167637/90‑1 (MQ=255) aGGCGGCTGGCATTGCGGCGGGTGGCA‑TCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACT‑Cg < 1:47207/90‑1 (MQ=255) aGGCGGCTGGCATTGCGGCGGGGGGGG‑TCGCCCCGGGTTTTTCACTCGCTAAAAAGGAAAAGGGGTGGGTATTTTGCGGCGGGGTACT‑Cg > 2:307172/1‑90 (MQ=255) ggcggcTGGCATTGCGGCGGGTGGCA‑TCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACT‑Cgg < 1:192252/90‑1 (MQ=255) ggcggcTGGCATTGCGGCGGGTGGCA‑TCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACT‑Cgg < 2:325778/90‑1 (MQ=255) gcggcTGGCATTGCGGCGGGGGGGA‑TCGCCCCGGCTTTTGCACTCGGTAAAATGCAAAAGGGGTGGGTATTTAGCGCCGGGAAACT‑CGGt > 1:326927/1‑90 (MQ=255) cTGGCATTGCGGCGGGGGGGT‑TCCCCCAGGGTTTCGCACTCAATAAAATGATCACGGGGTGGAAATTTAGCGCCGGGATAGT‑TGGtttag > 1:7837/1‑88 (MQ=255) cTGGCATTGCGGCGGGGGGGA‑TCGCCCCGGGGTTTCCGCTCGATAAAAACCAAAAGGGGGGGGGATTTTGCGCCGGGATACTCCGGtttc > 2:218937/1‑89 (MQ=255) tGCGGCGGGTGGCA‑TCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACT‑CGGTTTGCTACCCgg < 1:314050/90‑1 (MQ=255) | TCATCCCGCCTGATGCTGACCATCGGGCTTTGTTTTTTGGTCGCTCTGATGGAAGGGCTGGATCTTCAGGCGGCTGGCATTGCGGCGGGTGGCA‑TCGCCCAGGCTTTCGCACTCGATAAAATGCAAATGGGCTGGATATTTAGCGCCGGAATACT‑CGGTTTGCTACCCGG > NZ_CP009273/370942‑371111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |