| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,877,246 | A→T | intergenic (‑157/‑140) | dnaA ← / → BW25113_RS25780 | chromosomal replication initiator protein DnaA/protein YsdD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,877,246 | 0 | A | T | 100.0% | 64.1 / NA | 18 | intergenic (‑157/‑140) | dnaA/BW25113_RS25780 | chromosomal replication initiator protein DnaA/protein YsdD |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (6/12); total (6/12) | |||||||||||
AAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGT > NZ_CP009273/3877160‑3877330 | aaaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCa < 2:334247/90‑1 (MQ=255)aaaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCa < 2:302145/90‑1 (MQ=255)aaaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCa < 2:228130/90‑1 (MQ=255) aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCATa < 2:234265/90‑1 (MQ=255) ccTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCA‑AGCCTaa > 2:87480/1‑90 (MQ=255) gTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCATAGCCTAAACTGCGCAag < 2:294017/90‑1 (MQ=255) gACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCa > 2:211973/1‑70 (MQ=255) gACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCa < 1:211973/70‑1 (MQ=255) gCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCATAGCCTAAACTGCGCAAGAGAtc > 1:244850/1‑90 (MQ=255) atatGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTcc < 1:5377/90‑1 (MQ=255) atatGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTcc < 1:330658/90‑1 (MQ=255) atatGCCCGATCAACATCCTGCAAAACGATCGGGACCGCGGTTCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTcc < 1:108665/90‑1 (MQ=255) cGATCAAGATCCTGCAAAACGATCGGGACCGCGGTTCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTa < 1:339006/90‑1 (MQ=255) aTCAAGATCCTGCAAAACGATCGGGACCGCGGTTCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATc > 2:24933/1‑90 (MQ=255) cTGCAAAACGATCGGGACCGCGGTTCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACt > 2:40193/1‑90 (MQ=255) cTGCAAAACGATCGGGACCGCGGTTCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACt > 2:60750/1‑90 (MQ=255) gACCGCGGTTCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTa < 2:40029/90‑1 (MQ=255) cgcgGTTCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAgt < 2:108358/90‑1 (MQ=255) | AAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGT > NZ_CP009273/3877160‑3877330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |