Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1185935	1185962	28	2 [1]	[0] 2	phoP/purB	two‑component system response regulator PhoP/adenylosuccinate lyase

ATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAGTG  >  NZ_CP009273/1185845‑1185938                                                                                          |     aTCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAAt      <  2:200475/90‑1 (MQ=255)     gAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAgtg  >  1:101865/1‑90 (MQ=255)                                                                                          |     ATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAGTG  >  NZ_CP009273/1185845‑1185938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑