Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1997543	1997583	41	3 [0]	[1] 2	fliD	flagellar filament capping protein FliD

CAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCAT  >  NZ_CP009273/1997453‑1997542                                                                                          | cAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCAt  <  1:152086/90‑1 (MQ=255) cAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCAt  <  2:245962/90‑1 (MQ=255) cAAATAAGCAATCGTCCTTTCCCGCTAACCTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGCCTTTCCAGACCGCCAATACTGCAt  <  1:155887/90‑1 (MQ=255)                                                                                          | CAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCAT  >  NZ_CP009273/1997453‑1997542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑