Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3353604	3353614	11	3 [0]	[1] 2	gltD	glutamate synthase subunit GltD

CGTGATGAAGAGAACATGCCGGGTTCCCGCCGCGAAGTGAAAAACGCGCGGGAAGAAGGCGTAGAGTTCAAATTCAACGTCCAGCCGCTG  >  NZ_CP009273/3353514‑3353603                                                                                          | cgtGATGAAGAGAACATGCGGGGTTCCCGCCGCGAAGTGAAAAACGCGCGGGAAGAAGGCGTAGAGTTCAAATTCAACGTCCAGCCGCTg  <  1:139857/90‑1 (MQ=255) cgtGATGAAGAGAACATGCCGGGTTCCCGCCGCGAAGTGAAAAACGCGCGGGAAGAAGGCGTAGAGTTCAAATTCAACGTCCAGCCGCTg  <  1:238388/90‑1 (MQ=255) cgtGATGAAGAGAACATGCCGGGTTCCCGCCGCGAAGTGAAAAACGCGCGGGAAGAAGGCGTAGAGTTCAAATTCAACGTCCAGCCGCTg  <  2:90273/90‑1 (MQ=255)                                                                                          | CGTGATGAAGAGAACATGCCGGGTTCCCGCCGCGAAGTGAAAAACGCGCGGGAAGAAGGCGTAGAGTTCAAATTCAACGTCCAGCCGCTG  >  NZ_CP009273/3353514‑3353603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑