Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	908256	908277	22	5 [1]	[1] 2	hcp	hydroxylamine reductase

GCGGAATTTCGCTGTACGGGAAGCCTGCCATCTGTTGCGCCTGGGTGATAACCGCAGAGAAATCATCACCGTCCAGATGACGCACGCCAGGC  >  NZ_CP009273/908166‑908257                                                                                          |   gCGGAATTTCGCTGTACGGGAAGCCTGCCATCTGTTGCGCCTTGGTGATAACCGCAGAGAAATCATCACCGTCCAGATGACGCACgccag    >  1:222703/1‑90 (MQ=255) gCGGAATTTCGCTGTACGGGAAGCCTGCCATCTGTTGCGCCTGTGTGATAACCGCAGAGAAATCATCACCGTCCAGATGACGCACgccag    >  1:59126/1‑90 (MQ=255) gCGGAATTTCGCTGTACGGGAAGCCTGCCATCTGTTGCGCCTGGGTGATAACCGCAGAGAAATCATCACCGTCCAGATGACGCACgccag    <  2:38318/90‑1 (MQ=255) gCGGAATTTCGCTGTACGGGAAGCCTGCCATCTGTTGCGCCTGGGGGATAACCGCAGAGAAATCATCACCGTCCAGATGACGCACgccag    >  2:279553/1‑90 (MQ=255)   ggAATTTCGCTGTACGGGAAGCCTGCCATCTGTTGCGCCTGGGTGATAACCGCAGAGAAATCATCACCGTCCAGATGACGCACgccaggc  <  2:247736/90‑1 (MQ=255)                                                                                          |   GCGGAATTTCGCTGTACGGGAAGCCTGCCATCTGTTGCGCCTGGGTGATAACCGCAGAGAAATCATCACCGTCCAGATGACGCACGCCAGGC  >  NZ_CP009273/908166‑908257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑