Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1646927	1646952	26	2 [1]	[0] 2	BW25113_RS25635	tyrosine‑type recombinase/integrase

AATGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGC  >  NZ_CP009273/1646953‑1647023 |                                                                       aaTGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAgcgc  >  1:32244/1‑71 (MQ=255) aaTGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAgcgc  <  2:32244/71‑1 (MQ=255) |                                                                       AATGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGC  >  NZ_CP009273/1646953‑1647023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑