Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	587838	587850	13	2 [1]	[1] 4	nrfB	cyclic di‑3',5'‑guanylate‑activated glycosyltransferase NrfB

TCTGCACGTCGAAAGCAATACCGTCACCGTCAGCTAACAGTGCGGTCACGGCGCGGCGGCTGAAACAGGTGCCGACGCCTGCGCTGGGCACTT  >  NZ_CP009273/587848‑587940    |                                                                                          tctGCACGTCGAAAGCAATACCGTCACCGTCAGCTAACAGTGCGGTCACGGCGCGGCGGCTGAAACAGGTGCCGACGCCTGCGCTGGGCa     >  1:94022/1‑90 (MQ=255)    gCACGTCGAAAGCAATACCGTCACCGTCAGCTAACAGTGCGGTCACGGCGCGGCGGCTGAAACAGGTGCCGACGCCt               <  1:290895/77‑1 (MQ=255)    gCACGTCGAAAGCAATACCGTCACCGTCAGCTAACAGTGCGGTCACGGCGCGGCGGCTGAAACAGGTGCCGACGCCt               >  2:290895/1‑77 (MQ=255)    gCACGTCGAAAGCAATACCGTCACCGGCGGCTAACAGTGCGGTCACGGCGCGGCGGCTTAAACAGGTGCCGACGCCTTCGCTGGGCACtt  >  1:181720/1‑90 (MQ=255)    |                                                                                          TCTGCACGTCGAAAGCAATACCGTCACCGTCAGCTAACAGTGCGGTCACGGCGCGGCGGCTGAAACAGGTGCCGACGCCTGCGCTGGGCACTT  >  NZ_CP009273/587848‑587940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑