Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	649986	649987	2	2 [0]	[0] 2	dpiA	two‑component response regulator DpiA

ACAGTGGGTGACATGATAAAGCCGGAGGAAACTTGCCTCCGGCATTACTATTTACTTGCCTGTGACCGCTGCTGCCGTTCCTGGCACCAT  >  NZ_CP009273/649988‑650077 |                                                                                          acaGTGGGTGACATGATAAAGCCGGAGGAAACTTGCCTCCGGCATTACTATTTACTTGCCTGTGACCGCTGCTGCCGTTCCTGGCACCAt  >  2:3589/1‑90 (MQ=255) acaGTGGGTGACATGATAAAGCCGGAGGAAACTTGCCTCAGGCATTACTATTTACTTGCCTGTGACCGCTGCTGCCGTTCCTGGCACCAt  >  1:75578/1‑90 (MQ=255) |                                                                                          ACAGTGGGTGACATGATAAAGCCGGAGGAAACTTGCCTCCGGCATTACTATTTACTTGCCTGTGACCGCTGCTGCCGTTCCTGGCACCAT  >  NZ_CP009273/649988‑650077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑