Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3575397	3575440	44	3 [1]	[0] 2	hcp	Hcp1 family type VI secretion system effector

TATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGAT  >  NZ_CP009273/3575441‑3575505 |                                                                 tattaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGAt  >  1:155735/1‑65 (MQ=255) tattaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGAt  <  2:155735/65‑1 (MQ=255) |                                                                 TATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGAT  >  NZ_CP009273/3575441‑3575505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑