Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1866625	1866634	10	2 [1]	[0] 3	dgcJ	diguanylate cyclase DgcJ

CGGCGCGCCATCTGCGAGGCTTTTGAGTCTGCCAATAACACCCATGGCTTAAACCTGACTGCCCATAAATACCCGGGCTTACGCGGCACACTAC  >  NZ_CP009273/1866535‑1866628                                                                                          |     cggcgCGCCATCTGCGAGGCTTTTGAGTCTGCCAATAACCCCCATGGCTTAAACCTGACTGCCCATAAATACCCGGGCTTACGCGGcaca      <  2:71111/90‑1 (MQ=255)     gcgcCATCTGCGAGGCTTTTGAGTCTGCCAATAACACCCATGGCTTAAACCTGACTGCCCATAAATACCCGGGCTTACGCGGCACACTAc  >  2:282165/1‑90 (MQ=255)                                                                                          |     CGGCGCGCCATCTGCGAGGCTTTTGAGTCTGCCAATAACACCCATGGCTTAAACCTGACTGCCCATAAATACCCGGGCTTACGCGGCACACTAC  >  NZ_CP009273/1866535‑1866628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑