Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1596124	1596147	24	3 [1]	[0] 2	lsrA	autoinducer 2 ABC transporter ATP‑binding protein LsrA

GCATAGTCTGGCAGGATCGCTGGATGTCGCCGATCGCCAAATG  >  NZ_CP009273/1596148‑1596190 |                                           gCATAGTCTGGCAGGATCGCTGGATGTCGCCGATCGCCAAAtg  >  1:338895/1‑43 (MQ=255) gCATAGTCTGGCAGGATCGCTGGATGTCGCCGATCGCCAAAtg  <  2:338895/43‑1 (MQ=255) |                                           GCATAGTCTGGCAGGATCGCTGGATGTCGCCGATCGCCAAATG  >  NZ_CP009273/1596148‑1596190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑