Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1129365	1129396	32	2 [1]	[1] 2	flgF	flagellar basal‑body rod protein FlgF

TACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAACCGCCAGTAATCTGGCCAATGCCTCAACGCCCGGTTTTCGCGCGCAGT  >  NZ_CP009273/1129275‑1129369                                                                                          |      tcccGCGAGGGGAGCACCCAGCCAGACACTAAACCAACGGGGGGTAACCGCCAGTAATCTGACCAATGCCTCAACGCCCGGTTTTcgcgc       <  1:192116/88‑1 (MQ=255)      cgATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAACCGCCAGTAATCTGGCCAATGCCTCAACGCCCGGTTTTCGCGCGCAGt  >  2:70068/1‑90 (MQ=255)                                                                                          |      TACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAACCGCCAGTAATCTGGCCAATGCCTCAACGCCCGGTTTTCGCGCGCAGT  >  NZ_CP009273/1129275‑1129369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑