Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1185966	1185981	16	5 [0]	[1] 4	phoP/purB	two‑component system response regulator PhoP/adenylosuccinate lyase

CATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAGTGTAACGCGATTATGTGGTTATGGGGGTA  >  NZ_CP009273/1185876‑1185965                                                                                          | cATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAGTGTAACGCGATTATGTGGTTATGGGGGTa  <  1:158741/90‑1 (MQ=255) cATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAGTGTAACGCGATTATGTGGTTATGGGGGTa  <  1:54923/90‑1 (MQ=255) cATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAGTGTAACGCGATTATGTGGTTATGGGGGTa  >  2:18073/1‑90 (MQ=255)               acCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAGTGTAACGCGATTATGTGGTTATGGGGGTa  >  1:162314/1‑76 (MQ=255)               acCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAGTGTAACGCGATTATGTGGTTATGGGGGTa  <  2:162314/76‑1 (MQ=255)                                                                                          | CATTGTCTTCAACAACCAGTACGCGCATTTTTATTTCTCCCTGTCTTAATTATTAAAATAGTGTAACGCGATTATGTGGTTATGGGGGTA  >  NZ_CP009273/1185876‑1185965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑