Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1595041	1595080	40	2 [0]	[1] 3	lsrR	transcriptional regulator LsrR

AACGGAGCCGGAATAATATTCACACTGCACGCCGCGTTAAGCTGCCCGATTCCCGTCATATAAGAACCG  >  NZ_CP009273/1594972‑1595040                                                                     | aaCGGAGCCGGAATAATATTCACACTGCACGCCGCGTTAAGCTGCCCGATTCCCGTCATATAAGAACCg  >  1:112451/1‑69 (MQ=255) aaCGGAGCCGGAATAATATTCACACTGCACGCCGCGTTAAGCTGCCCGATTCCCGTCATATAAGAACCg  <  2:112451/69‑1 (MQ=255)                                                                     | AACGGAGCCGGAATAATATTCACACTGCACGCCGCGTTAAGCTGCCCGATTCCCGTCATATAAGAACCG  >  NZ_CP009273/1594972‑1595040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑