Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 1609218 1609267 50 2 [0] [1] 2 yneJ LysR family transcriptional regulator

GCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATC  >  NZ_CP009273/1609174‑1609217
                                           |
gCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATc  >  1:56919/1‑44 (MQ=255)
gCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATc  <  2:56919/44‑1 (MQ=255)
                                           |
GCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATC  >  NZ_CP009273/1609174‑1609217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: