Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NZ_CP009273	1,613,631	Δ3 bp	coding (255‑257/435 nt)	marR →	multiple antibiotic resistance transcriptional regulator MarR

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1613631	1613633	3	4 [0]	[0] 4	marR	multiple antibiotic resistance transcriptional regulator MarR

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1613630	0 (0.000)	4 (0.450)	4/170	0.6	100%	coding (254/435 nt)	marR	multiple antibiotic resistance transcriptional regulator MarR
	?	NZ_CP009273	1613634 =	0 (0.000)					coding (258/435 nt)	marR	multiple antibiotic resistance transcriptional regulator MarR

CTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAAT  >  NZ_CP009273/1613543‑1613707                                                                                        |                                                                              cTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgt                                                                             >  1:26129‑M1/1‑88 (MQ=255)                     gTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAgttgccgaacccgaatgacaag                                                         <  2:3564‑M1/90‑23 (MQ=255)                                        gAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaac                                      >  2:45736‑M1/1‑49 (MQ=255)                                                                            aaGGCTGGGTGGAgttgccgaacccgaatgacaagcgcggcgtactggtaaaacttaccaccggcggcgcggcaatatgtgaacaatgcc  <  1:107648‑M1/90‑78 (MQ=255)                                                                                        |                                                                              CTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAAT  >  NZ_CP009273/1613543‑1613707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑