Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1700554	1700568	15	2 [0]	[1] 2	rsxA	electron transport complex subunit RsxA

GATGGTGCTCTTCGCCGCCATCCGCGAACGCCTTGCTGTGGCTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGC  >  NZ_CP009273/1700464‑1700553                                                                                          | gATGGTGCTCTTCGCCGCCATCCGCGAACGCCTTGCTGTGGCTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGc  <  1:17431/90‑1 (MQ=255) gATGGTGCTCTTCGCCGCCATCCGCGAACGCCTTGCTGTGGCTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGc  <  2:4511/90‑1 (MQ=255)                                                                                          | GATGGTGCTCTTCGCCGCCATCCGCGAACGCCTTGCTGTGGCTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGC  >  NZ_CP009273/1700464‑1700553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑