Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2013763	2013810	48	2 [1]	[1] 2	fliM	flagellar motor switch protein FliM

CGTCCGTACGATCCGAATACCCAACGACGGGTTGTGCGCGAACGTTTGCAGGCGCTGGAAATCATTAATGAGCGCTTTGCCCGCCATTTTCGTATGGGGCTGTTCAACCTGC  >  NZ_CP009273/2013673‑2013784                                                                                          |                       cGTCCGTACGACCCAAATCCCCAACGGGGGGTTGTGCGCGAACTTTTGCGGGCGCTGGAAATCATTAATGAGCGTTTTGCCCGCCAtttt                        <  2:180567/90‑1 (MQ=255)                       aaCGACGGGTTGTGCGCGAACGTTTGCAGGCGCTGGAAATCATTAATGAGCGCTTTGCCCGCCATTTTCGTATGGGGCTGTTCAACctgc  >  1:138293/1‑90 (MQ=255)                                                                                          |                       CGTCCGTACGATCCGAATACCCAACGACGGGTTGTGCGCGAACGTTTGCAGGCGCTGGAAATCATTAATGAGCGCTTTGCCCGCCATTTTCGTATGGGGCTGTTCAACCTGC  >  NZ_CP009273/2013673‑2013784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑