Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2015299	2015329	31	2 [1]	[1] 2	fliO	flagellar biosynthetic protein FliO

TGCACGGCTGGTGCTCGGCGTTACCGCAGGTCAAATCAATCTGCTGCATAAACTTCCCCCTTCTGCACCAACGGAAGAGATACCGCAGACCG  >  NZ_CP009273/2015209‑2015300                                                                                          |   tGCACGGCTGGTGCTCGGCGTTACCGCAGGTCAAATCAATCTGCTGCATAAACTTCCCCCTTCTGCACCAACGGAAGAGATACCGCAGAc    >  1:68240/1‑90 (MQ=255)   cACGGCTGGTGCTCGGCGTTACCGCAGGTCAAATCAATCTGCTGCATAAACTTCCCCCTTCTGCACCAACGGAAGAGATACCGCAGACCg  >  1:31033/1‑90 (MQ=255)                                                                                          |   TGCACGGCTGGTGCTCGGCGTTACCGCAGGTCAAATCAATCTGCTGCATAAACTTCCCCCTTCTGCACCAACGGAAGAGATACCGCAGACCG  >  NZ_CP009273/2015209‑2015300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑