Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3402430	3402441	12	3 [0]	[0] 2	prmA	50S ribosomal protein L11 methyltransferase

AGTTTGCTGGCTTTCCTGGTCGGAAACCGTTTCGGTACATCCGTCCCGCAAGCTACCGTTTTGACTACTGATAAATAAAGAGTTTTGCCA  >  NZ_CP009273/3402340‑3402429                                                                                          | aGTTTGCTGGCTTTCCTGGTCGGAAACCGTTTCGGTACATCCGTCCCGCAAGCTACCGTTTTGACTACTGATAAATAAAGAGTTTTGCCa  <  1:23155/90‑1 (MQ=255)                   gTCGGAAACCGTTTCGGTACATCCGTCCCGCAAGCTACCGTTTTGACTACTGATAAATAAAGAGTTTTGCCa  <  1:100637/72‑1 (MQ=255)                   gTCGGAAACCGTTTCGGTACATCCGTCCCGCAAGCTACCGTTTTGACTACTGATAAATAAAGAGTTTTGCCa  >  2:100637/1‑72 (MQ=255)                                                                                          | AGTTTGCTGGCTTTCCTGGTCGGAAACCGTTTCGGTACATCCGTCCCGCAAGCTACCGTTTTGACTACTGATAAATAAAGAGTTTTGCCA  >  NZ_CP009273/3402340‑3402429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑