Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1067206	1067284	79	2 [0]	[1] 2	[rutD]–[rutC]	[rutD],[rutC]

TACCAGTCCGCACTGAATGCAGAATCGCGCCGGTTTATCACCCGGAAAAAACTCGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGG  >  NZ_CP009273/1067280‑1067374      |                                                                                          tACCAGTCCGCACTGAATGCAGAATCGCGCCGGTTTATCACCCGGAAAAAACTCGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCa       >  1:185450/1‑90 (MQ=255)      gTCCGCACTGAATGCAGAATCGCGCCGGTTTATCACCCGGAAAAAACTCGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCgg  >  2:112386/1‑90 (MQ=255)      |                                                                                          TACCAGTCCGCACTGAATGCAGAATCGCGCCGGTTTATCACCCGGAAAAAACTCGGCGTAGATTTCGTTAATCGCGGCGTAATTTTTCCAGTCGG  >  NZ_CP009273/1067280‑1067374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑