Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1231915	1231942	28	3 [1]	[1] 2	ycgB	SpoVR family protein

GTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTTTCTCTTCCTCGCGC  >  NZ_CP009273/1231941‑1232032   |                                                                                          gTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTTTCTCTTCCTcgc    <  2:51772/90‑1 (MQ=255)   ggCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTTTCTCTTCCTCgcgc  >  2:26189/1‑90 (MQ=255)   |                                                                                          GTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTTTCTCTTCCTCGCGC  >  NZ_CP009273/1231941‑1232032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑