Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1421700	1421738	39	2 [1]	[0] 2	BW25113_RS07175	Ail/Lom family outer membrane beta‑barrel protein

ATGGTGGGGCCGTCTGTGCGCGTGAATGAATGGTTCAGC  >  NZ_CP009273/1421739‑1421777 |                                       aTGGTGGGGCCGTCTGTGCGCGTGAATGAATGGTTCAgc  >  1:209705/1‑39 (MQ=255) aTGGTGGGGCCGTCTGTGCGCGTGAATGAATGGTTCAgc  <  2:209705/39‑1 (MQ=255) |                                       ATGGTGGGGCCGTCTGTGCGCGTGAATGAATGGTTCAGC  >  NZ_CP009273/1421739‑1421777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑