Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1701695	1701704	10	2 [1]	[0] 2	rsxC	electron transport complex subunit RsxC

CGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGC  >  NZ_CP009273/1701705‑1701744 |                                        cGTACATTACCGCCGATGACCGTTTGATGCAGGATTgcgc  <  1:48357/40‑1 (MQ=255) cGTACATTACCGCCGATGACCGTTTGATGCAGGATTgcgc  >  2:48357/1‑40 (MQ=255) |                                        CGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGC  >  NZ_CP009273/1701705‑1701744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑