Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1818479	1818522	44	2 [1]	[1] 3	cho	excinuclease Cho

CTGGAAGAAGCGACAACGTTAATTCGGACACCCGCCGGGTTTGATCACGACGGTTATAAAATTCTTTGTAAGCCGCTGCTTTCCGGTAAC  >  NZ_CP009273/1818522‑1818611  |                                                                                         cTGGAAGAAGCGACAACGTTAATTCGGACACCCGCCGGGTTTGATCACGACGGTTATAAAATTCTTTGTAAGCCGCTGCTTTCCGGTAAc  >  1:157595/1‑90 (MQ=255)  tGGAAGAAGCGACAACGTTAATTCGGACACCCGCCGGGtt                                                   >  1:145163/1‑40 (MQ=255)  tGGAAGAAGCGACAACGTTAATTCGGACACCCGCCGGGtt                                                   <  2:145163/40‑1 (MQ=255)  |                                                                                         CTGGAAGAAGCGACAACGTTAATTCGGACACCCGCCGGGTTTGATCACGACGGTTATAAAATTCTTTGTAAGCCGCTGCTTTCCGGTAAC  >  NZ_CP009273/1818522‑1818611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑