Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2014002	2014010	9	2 [1]	[1] 3	fliM	flagellar motor switch protein FliM

TACCCATACCGAACAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCGATTAATCCGCTGGA  >  NZ_CP009273/2014005‑2014094       |                                                                                    tACCCATACCGAACAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCGATTAATCCGCTGGa  >  2:235671/1‑90 (MQ=255)       tACCGAACAGCGCGTCATCAACCGCATGTTGAAACTGgc                                               >  1:19167/1‑39 (MQ=255)       tACCGAACAGCGCGTCATCAACCGCATGTTGAAACTGgc                                               <  2:19167/39‑1 (MQ=255)       |                                                                                    TACCCATACCGAACAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCGATTAATCCGCTGGA  >  NZ_CP009273/2014005‑2014094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑