Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2662099	2662151	53	2 [1]	[1] 2	hcaR	DNA‑binding transcriptional regulator HcaR

CTCACCAGTAACGGAACACCGACACAGTTTTCAAGATCGCGGATCTGGCTGCTTAACGAAGGCTGTGAGGTATGCAGTTTTTCCGCCGCACGGGTAAAGTTCAGTGCCTGCGCCACTGCGACGAAATAGCGTAAA  >  NZ_CP009273/2662107‑2662241                                              |                                                                                          cTCACCAGTAACGGAACACCGACACAGTTTTCAAGATCGCGGATCTGGCTGCTTAACGAAGGCTGTGAGGTATGCAGTTTTTCCGCCGCa                                               <  1:171246/90‑1 (MQ=255)                                              tGGCTGCTTAACGAAGGCTGTGAGGTATGCAGTTTTTCCGCCGCACGGGTAAAGTTCAGTGCCTGCGCCACTGCGACGAAATAGCGTaaa  <  1:140762/90‑1 (MQ=255)                                              |                                                                                          CTCACCAGTAACGGAACACCGACACAGTTTTCAAGATCGCGGATCTGGCTGCTTAACGAAGGCTGTGAGGTATGCAGTTTTTCCGCCGCACGGGTAAAGTTCAGTGCCTGCGCCACTGCGACGAAATAGCGTAAA  >  NZ_CP009273/2662107‑2662241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑