Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	539770	539875	106	2 [1]	[1] 2	allC	allantoate deiminase

CGGCAGCGTCGGTATGACGACAATCAATGGTGAACGTGGTTTTACCCGGCACCACATTTACCGTATTCGGGCGCGGCTCTACTTTGCCAAAGGTCAG  >  NZ_CP009273/539869‑539965        |                                                                                          cGGCAGCGTCGGTATGACGACAATCAATGGTGAACGTGGTTTTACCCGGCACCACATTTACCGTATTCGGGCGCGGCTCTACTTTGCCaa         <  2:83630/90‑1 (MQ=255)        gTCGGTATGACGACAATCAATGGTGAACGTGGTTTTACCCGTCACCACATTTACCGTATTCGGGCGCGGCTCTACTTTGCCAAAGGTCAg  >  2:192180/1‑90 (MQ=255)        |                                                                                          CGGCAGCGTCGGTATGACGACAATCAATGGTGAACGTGGTTTTACCCGGCACCACATTTACCGTATTCGGGCGCGGCTCTACTTTGCCAAAGGTCAG  >  NZ_CP009273/539869‑539965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑