Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3406931	3406972	42	2 [1]	[1] 2	acrS/acrE	multidrug efflux transporter transcriptional repressor AcrS/multidrug efflux RND transporter periplasmic adaptor subunit AcrE

CCTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTTTTAATTCTGCCTCTTTCAACCCGCGTCAAAATAAAACAGTAGAATATTAATC  >  NZ_CP009273/3406964‑3407062          |                                                                                          ccTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTTTTAATTCTGCCTCTTTCAACCCGCGTCAAAATAAAACAGTAGa           >  1:55421/1‑90 (MQ=255)          cATTCACTACATCAATATATATTTCAATTTACGAGGTTTTAATTCTGCCTCTTTCAACCCGCGTCAAAATAAAACAGTAGAATATTAATc  >  1:14770/1‑90 (MQ=255)          |                                                                                          CCTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTTTTAATTCTGCCTCTTTCAACCCGCGTCAAAATAAAACAGTAGAATATTAATC  >  NZ_CP009273/3406964‑3407062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑